Journal: Scientific Reports

Article Title: Utilization of a Wheat660K SNP array-derived high-density genetic map for high-resolution mapping of a major QTL for kernel number

doi: 10.1038/s41598-017-04028-6

Figure Lengend Snippet: Synteny of the mapped SNPs from the Wheat660K SNP array (in blue ) with that from the Wheat90K array (in red ) based on their common CSS-assembled contigs.

Article Snippet: Genomic DNA was extracted and hybridized on the Wheat660K SNP genotyping array by Compass Biotechnology Company (Beijing, China).

Techniques:

Journal: Scientific Reports

Article Title: Utilization of a Wheat660K SNP array-derived high-density genetic map for high-resolution mapping of a major QTL for kernel number

doi: 10.1038/s41598-017-04028-6

Figure Lengend Snippet: Synteny of the mapped SNPs from the Wheat660K SNP array (in blue ) with that from the Wheat820K array (in green ) based on their common CSS-assembled contigs. Notes: The genetic maps of chromosomes 3A, 4B, 5D, 6D and 7B derived from the Wheat820K SNP array are shown in inverted form, with long arms at the top and short arms at the bottom . In this figure, these inversions were corrected.

Article Snippet: Genomic DNA was extracted and hybridized on the Wheat660K SNP genotyping array by Compass Biotechnology Company (Beijing, China).

Techniques: Derivative Assay

Journal: Plant Biotechnology Journal

Article Title: Wheat heat tolerance is impaired by heightened deletions in the distal end of 4AL chromosomal arm

doi: 10.1111/pbi.13529

Figure Lengend Snippet: Major steps in TaHST1 mapping. (a) Genomic similarity and difference between E6015‐3S and E6015‐4T analysed using an Affymetrix 55K chip. The six regions shown in blue contained continuous stretches of polymorphic SNPs. (b) Mapping of TaHST1 to an interval of 5.310 Mbp (739.278–744.588 Mbp) using 272 F 2 plants. (c) Reduction of TaHST1 ‐containing interval to 2.021 Mbp (742.567–744.588 Mbp) by analysing 88 F 2 recombinants (top panel) and narrowing down TaHST1 ‐containing interval to 0.949 Mbp (743.639–744.588 Mbp) by analysing 42 F 3 recombinants (lower panel). Arrowhead indicates the end position of 4AL (744.588 Mbp) according to CS genome sequence (IWGSC RefSeq assembly v1.0). This reference genome sequence was also used to infer the physical positions of DNA markers used in the mapping.

Article Snippet: The resulting DNA samples were genotyped using the 55K SNP Array, which was designed to analyse 66 835 SNPs, by CapitalBio Technology Company (Beijing, China) as described previously (Liu et al., ).

Techniques: Sequencing